Every year, autochthonous cases of
Plasmodium vivax
malaria occur in low-endemicity areas of Vale do Ribeira in the south-eastern part of the Atlantic Forest, state of São Paulo, where
Anopheles cruzii
and
Anopheles bellator
are considered the primary vectors. However, other species in the subgenus
Nyssorhynchus of
Anopheles (e.g.,
Anopheles marajoara
) are abundant and may participate in the dynamics of malarial transmission in that region. The objectives of the present study were to assess the spatial distribution of
An. cruzii,
An. bellator and
An. marajoara and to associate the presence of these species with malaria cases in the municipalities of the Vale do Ribeira. Potential habitat suitability modelling was applied to determine both the spatial distribution of
An. cruzii,
An. bellator and
An. marajoara and to establish the density of each species. Poisson regression was utilized to associate malaria cases with estimated vector densities. As a result,
An. cruzii was correlated with the forested slopes of the Serra do Mar,
An. bellator with the coastal plain and
An. marajoara with the deforested areas. Moreover, both
An. marajoara and
An. cruzii were positively associated with malaria cases. Considering that
An. marajoara was demonstrated to be a primary vector of human
Plasmodium in the rural areas of the state of Amapá, more attention should be given to the species in the deforested areas of the Atlantic Forest, where it might be a secondary vector.